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Linux command line exercises for NGS data processing Linux command line exercises for NGS data processing by The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. Copy the required files to your current directory, change directory ( cd) to the linuxTutorial folder, and do all the processing inside: [uzi@quince-srv2 ~/]$ cp -r /home/opt/MScBioinformatics/linuxTutorial. [uzi@quince-srv2 ~/]$ cd linuxTutorial [uzi@quince-srv2 ~/linuxTutorial]$ I have deliberately chosen Awk in the exercises as it is a language in itself and is used more often to manipulate NGS data as compared to the other command line tools such as grep, sed, perl etc. Furthermore, having a command on awk will make it easier to understand advanced tutorials such as.
In Linux, we use a shell that is a program that takes your commands from the keyboard and gives them to the operating system. Most Linux systems utilize Bourne Again SHell ( bash), but there are several additional shell programs on a typical Linux system such as ksh, tcsh, and zsh. To see which shell you are using, type [uzi@quince-srv2 ~/linuxTutorial]$ echo $SHELL /bin/bash To see where you are in the file system: [uzi@quince-srv2 ~/linuxTutorial]$ pwd /home/uzi/linuxTutorial List the files in the current directory: [uzi@quince-srv2 ~/linuxTutorial]$ ls data Now try different commands from the sheet given below. Linux Commands Cheat Sheet • File System ls — list items in current directory ls -l — list items in current directory and show in long format to see perimissions, size, and modification date ls -a — list all items in current directory, including hidden files ls -F — list all items in current directory and show directories with a slash and executables with a star ls dir — list all items in directory dir cd dir — change directory to dir cd.
Released on 2007/12/31 Garmin Unlock Generator v1.3 This keygen will generate unlock codes both for device and locked maps using Garmin format. Instructions to generate device unlock code for GMXT: ---------------------------------------------------- 1. Download and install Garmin Mobile XT. Extract the archive to your storage card.
Insert your storage card into your PPC, when prompted, install the application. Launch GMXT, got to Settings -> About. Make note of your 'Card ID' 6. Launch the keygen, and type in your 'Card ID' into the 'Unit ID' field. Hit Generate button to generate device unlock key.
Copy (CTRL+C) your generated device unlock key to the clipboard. Now open the Notepad and paste (CTRL+V) the key and save the file as SW.UNL 10. Put your newly created file to your SD Card Garmin directory and restart GMXT.
Instructions to generate device unlock code for GMXT: ---------------------------------------------------- 1. Launch the keygen and enter your 10# GPS Unit ID (or GMXR Card ID, Unlock ESN). Select Map product and hit the corresponding Generate button to generate both Device & Map unlock key. NOTE: If your map is not included in the Map product list, select, enter the corresponding MapID and hit OK.
If you are not sure about your MapID, install it first into the MapSource, open regedit and browse for one of the following keys: [HKEY_LOCAL_MACHINE SOFTWARE Garmin Mapsource Families ] or [HKEY_LOCAL_MACHINE SOFTWARE Garmin Mapsource Product ] and check the 'ID' REG_BINARY. That is your MapID (in HEX). You have to convert it from HEX to decimal (do not forget to reverse the byte order when coverting) 3. Hit Generate button to generate map unlock key. Copy (CTRL+C) your generated map unlock key to the clipboard. Open the Notepad again and paste (CTRL+V) the key and save the file as GMAPSUPP.UNL 6.